Protein ZmPHD38
ZmPHD38 is a protein in the PHD family.
Information
Coreg Name: ZmPHD38
Species: Maize
Coreg Family: PHD
Gene Name(Synonym): PHD38
Uniprot ID: A0A1D6PDQ1
Subgenome: 2

Protein ZmPHD38

ZmPHD38 is a protein in the PHD family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
PF00628PF01448
Zm00001eb274650_T006
Zm00001eb274650_T001
Zm00001eb274650_T002
Zm00001eb274650_T003
Zm00001eb274650_T004
Zm00001eb274650_T005
Zm00001eb274650_T007

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d036673DAPseq no logo sequence fimo position
Zm00001d036673DAPseq no logo sequence fimo position
Zm00001d036673ChIPseq no logo sequence fimo position
Zm00001d036673PChIPseq no logo sequence fimo position

Interactions where ZmPHD38 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmPHD38 is the target  
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There are 69 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb274650_T006 from maize genome v5

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKGTLAVLHQCCPQMGVDTVYQFSSDASDEVRASRYEIRVYA

MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKGTLAVLHQCCPQMGVDTVYQFSSDASDEVRASRYEIRVYA

MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKGTLAVLHQCCPQMGVDTVYQFSSDASDEVRASRYEIRVYA

MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKGTLAVLHQCCPQMGVDTVYQFSSDASDEVRASRYEIRVYA

MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKGTLAVLHQCCPQMGVDTVYQFSSDASDEVRASRYEIRVYA

MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKGTLAVLHQCCPQMGVDTVYQFSSDASDEVRASRYEIRVYA

MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKGTLAVLHQCCPQMGVDTVYQFSSDASDEVRASRYEIRVYA

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00628
PF01448
PF00628
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Nucleotide Sequence
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TTTCTCAGCACCTTCTTGTGCCGTT...

GRMZM2G473250_T01 from maize genome v3

Amino Acid Sequence
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MLIPHSLCSREDEFAEPTELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPI
HADCAVPQELETVKVHEQLKYINKLKNRLGDSNQKR

Nucleotide Sequence
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GGGGGACAGACCTTCGCTGTGGTTT...

GRMZM2G473258_T01 from maize genome v3


Related TFome: pUT6483

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISRYARLLLIKL
L

Nucleotide Sequence
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TTTCTCAGCACCTTCTTGTGCCGTT...

GRMZM2G473258_T02 from maize genome v3

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISRYARLLLIKL
L

Nucleotide Sequence
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TTTCTCAGCACCTTCTTGTGCCGTT...

Zm00001d036673_T001 from maize genome v4

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQGTLAVLHQCC
PQMGVDTVYQFSSDASDEVRASRYEIRVYA

Nucleotide Sequence
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ACGGAAACCATTTCTCAGCACCTTC...

Zm00001d036673_T002 from maize genome v4

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKLKNRLGDSNQKR

Nucleotide Sequence
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ACGGAAACCATTTCTCAGCACCTTC...

Zm00001eb274650_T001 from maize genome v5

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKLKNRLGDSNQKR

Nucleotide Sequence
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CTACGATCCGTTATACCTAGAGGTT...

Zm00001eb274650_T002 from maize genome v5

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKGTLAVLHQCCPQMGVDTVYQFSSDASDEVRASRYEIRVYA

Nucleotide Sequence
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TCTCTGATGTCGCGGGGAAGAAATT...

Zm00001eb274650_T003 from maize genome v5

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISREDEFAEPTE
LDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQL
KYINKLKNRLGDSNQKR

Nucleotide Sequence
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ATTTCTCAGCACCTTCTTGTGCCGT...

Zm00001eb274650_T004 from maize genome v5

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKLKNRLGDSNQKR

Nucleotide Sequence
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TTTCTCAGCACCTTCTTGTGCCGTT...

Zm00001eb274650_T005 from maize genome v5

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKLKNRLGDSNQKR

Nucleotide Sequence
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TTTCTCAGCACCTTCTTGTGCCGTT...

Zm00001eb274650_T007 from maize genome v5

Amino Acid Sequence
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MAVKSSRSSDESYIEPLLCWKKEFRSSVIKIVDSSLNSSLMSADSICSIPASEYGFYFNKRMKMDEEYDHLLTNGNMKDS
STANFTTTGYVSSPERNMDGQSCMVSSTTEFLAGSHSNVNTGQPSSSSSAPSYISQSIKEAWECSLPDTNTPKPLTELIS
ARDLCISILKRKICSAKDSELSRTSSTIDRDDNLNNPLFECTKCGLMEDPSKMLICDCCEGAFHLLCCNPHVKKIPEEEW
YCLACKRKKPKRQRGKFANPKVESSKGIQRPRRGLGPIRDMLLDSESYESGVRIGTKFQAEVPKWSGPISSREDEFAEPT
ELDRSKTTMLSFEDKKTSIGNWIQCREVLDTGVVCGKWRRAPLFVVQSSDWDCSCSVVWDPIHADCAVPQELETVKVHEQ
LKYINKVYSL

Nucleotide Sequence
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CAGCAACCATCAGCGTCCAACCTCC...


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